AU2001243573A1 - Methods for optimizing hybridization performance of polynucleotide probes and localizing and detecting sequence variations - Google Patents

Methods for optimizing hybridization performance of polynucleotide probes and localizing and detecting sequence variations

Info

Publication number
AU2001243573A1
AU2001243573A1 AU2001243573A AU4357301A AU2001243573A1 AU 2001243573 A1 AU2001243573 A1 AU 2001243573A1 AU 2001243573 A AU2001243573 A AU 2001243573A AU 4357301 A AU4357301 A AU 4357301A AU 2001243573 A1 AU2001243573 A1 AU 2001243573A1
Authority
AU
Australia
Prior art keywords
localizing
methods
sequence variations
polynucleotide probes
detecting sequence
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2001243573A
Inventor
Thomas M. Brennan
Maureen T Cronin
Felix Frueh
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Protogene Laboratories Inc
Original Assignee
PROTOGENE LAB Inc
Protogene Laboratories Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by PROTOGENE LAB Inc, Protogene Laboratories Inc filed Critical PROTOGENE LAB Inc
Publication of AU2001243573A1 publication Critical patent/AU2001243573A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6832—Enhancement of hybridisation reaction
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
AU2001243573A 2000-03-09 2001-03-09 Methods for optimizing hybridization performance of polynucleotide probes and localizing and detecting sequence variations Abandoned AU2001243573A1 (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US52198300A 2000-03-09 2000-03-09
US09/521,983 2000-03-09
US61351700A 2000-07-10 2000-07-10
US09/613,517 2000-07-10
PCT/US2001/007775 WO2001066804A2 (en) 2000-03-09 2001-03-09 Methods for optimizing hybridization performance of polynucleotide probes and localizing and detecting sequence variations

Publications (1)

Publication Number Publication Date
AU2001243573A1 true AU2001243573A1 (en) 2001-09-17

Family

ID=27060660

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2001243573A Abandoned AU2001243573A1 (en) 2000-03-09 2001-03-09 Methods for optimizing hybridization performance of polynucleotide probes and localizing and detecting sequence variations

Country Status (2)

Country Link
AU (1) AU2001243573A1 (en)
WO (1) WO2001066804A2 (en)

Families Citing this family (15)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2003018837A2 (en) * 2001-08-24 2003-03-06 Adnagen Ag Method and diagnostic kit for the molecular diagnosis of pharmacologically relevant genes
US7132236B2 (en) 2001-10-25 2006-11-07 Agilent Technologies, Inc. Composition and method for optimized hybridization using modified solutions
DE10361137A1 (en) * 2003-12-23 2005-07-28 Alopex Gmbh Microarray, kit and method for validating and / or calibrating a system of hybridization experiments
CA2572176A1 (en) * 2004-06-21 2006-01-05 Nimblegen Systems, Inc. Probe optimization methods
US20060046252A1 (en) * 2004-08-30 2006-03-02 Srinka Ghosh Method and system for developing probes for dye normalization of microarray signal-intensity data
US20060078899A1 (en) * 2004-10-12 2006-04-13 Scheffer Alicia F Methods and compositions for reducing label variation in array-based comparative genome hybridization assays
US20060078898A1 (en) * 2004-10-12 2006-04-13 Curry Bo U Methods and compositions for reducing label variation in array-based comparative genome hybridization assays II
US20070003939A1 (en) * 2005-07-01 2007-01-04 Hui Wang Melting temperature matching
CN102154274A (en) * 2006-11-30 2011-08-17 爱科来株式会社 Primer set for amplification of nat2 gene, reagent for amplification of nat2 gene comprising the same, and use of the same
WO2009144581A1 (en) 2008-05-27 2009-12-03 Dako Denmark A/S Hybridization compositions and methods
US9388456B2 (en) * 2009-02-26 2016-07-12 Dako Denmark A/S Compositions and methods for performing a stringent wash step in hybridization applications
US10662465B2 (en) 2011-09-30 2020-05-26 Agilent Technologies, Inc. Hybridization compositions and methods using formamide
EP3252173A1 (en) 2011-10-21 2017-12-06 Dako Denmark A/S Hybridization compositions and methods
CN105297145B (en) * 2015-11-06 2019-03-08 艾吉泰康生物科技(北京)有限公司 A kind of method preparing gene DNA Probe Library and kit
CN106367489A (en) * 2016-08-29 2017-02-01 厦门致善生物科技股份有限公司 NAT2 gene polymorphism fluorescence PCR melting curve detection kit

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2002515738A (en) * 1996-01-23 2002-05-28 アフィメトリックス，インコーポレイティド Nucleic acid analysis
WO1998041657A1 (en) * 1997-03-20 1998-09-24 Affymetrix, Inc. Iterative resequencing
US6251588B1 (en) * 1998-02-10 2001-06-26 Agilent Technologies, Inc. Method for evaluating oligonucleotide probe sequences
US7013221B1 (en) * 1999-07-16 2006-03-14 Rosetta Inpharmatics Llc Iterative probe design and detailed expression profiling with flexible in-situ synthesis arrays

Also Published As

Publication number Publication date
WO2001066804A2 (en) 2001-09-13
WO2001066804A3 (en) 2003-05-30

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