ATE406621T1 - Computerimplementiertes verfahren und computergestütztes system zur validierung von dna-sequenzierungsdaten - Google Patents

Computerimplementiertes verfahren und computergestütztes system zur validierung von dna-sequenzierungsdaten

Info

Publication number
ATE406621T1
ATE406621T1 AT05700367T AT05700367T ATE406621T1 AT E406621 T1 ATE406621 T1 AT E406621T1 AT 05700367 T AT05700367 T AT 05700367T AT 05700367 T AT05700367 T AT 05700367T AT E406621 T1 ATE406621 T1 AT E406621T1
Authority
AT
Austria
Prior art keywords
sequence
computer
data
dna sequencing
sequencing data
Prior art date
Application number
AT05700367T
Other languages
English (en)
Inventor
Stefan Emler
Original Assignee
Smartgene Gmbh
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Smartgene Gmbh filed Critical Smartgene Gmbh
Application granted granted Critical
Publication of ATE406621T1 publication Critical patent/ATE406621T1/de

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly

Landscapes

  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
AT05700367T 2005-02-11 2005-02-11 Computerimplementiertes verfahren und computergestütztes system zur validierung von dna-sequenzierungsdaten ATE406621T1 (de)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/CH2005/000079 WO2006084391A1 (en) 2005-02-11 2005-02-11 Computer-implemented method and computer-based system for validating dna sequencing data

Publications (1)

Publication Number Publication Date
ATE406621T1 true ATE406621T1 (de) 2008-09-15

Family

ID=34960293

Family Applications (1)

Application Number Title Priority Date Filing Date
AT05700367T ATE406621T1 (de) 2005-02-11 2005-02-11 Computerimplementiertes verfahren und computergestütztes system zur validierung von dna-sequenzierungsdaten

Country Status (9)

Country Link
US (1) US8275557B2 (de)
EP (1) EP1846853B1 (de)
CN (1) CN101137991A (de)
AT (1) ATE406621T1 (de)
AU (1) AU2005327056B2 (de)
CA (1) CA2594633C (de)
DE (1) DE602005009406D1 (de)
ES (1) ES2311958T3 (de)
WO (1) WO2006084391A1 (de)

Families Citing this family (19)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN102159726A (zh) * 2008-09-05 2011-08-17 生命科技公司 用于核酸测序验证、校准和标准化的方法和***
US9169515B2 (en) 2010-02-19 2015-10-27 Life Technologies Corporation Methods and systems for nucleic acid sequencing validation, calibration and normalization
EP2590134A4 (de) * 2010-06-30 2016-04-27 Nikon Corp System zur unterstützung der verhinderung der verbreitung einer infektion, server zur unterstützung der verhinderung der verbreitung einer infektion, untersuchungsterminal, mobiles endgerät und programm dafür
WO2012031029A2 (en) 2010-08-31 2012-03-08 Lawrence Ganeshalingam Method and systems for processing polymeric sequence data and related information
WO2012108920A1 (en) * 2011-02-09 2012-08-16 Natera, Inc Methods for non-invasive prenatal ploidy calling
US20120236861A1 (en) 2011-03-09 2012-09-20 Annai Systems, Inc. Biological data networks and methods therefor
WO2013049420A1 (en) * 2011-09-27 2013-04-04 Maltbie Dan System and method for facilitating network-based transactions involving sequence data
DK2856375T3 (en) * 2012-06-01 2018-11-05 European Molecular Biology Laboratory High capacity storage of digital information in DNA
EP2864896A4 (de) 2012-06-22 2016-07-20 Dan Maltbie System und verfahren zur sicheren hochgeschwindigkeitsübertragung von sehr grossen dateien
CN103559425B (zh) * 2013-11-19 2017-02-15 黑龙江省森林工程与环境研究所 一种高通量基因测序的有效数据分类寻优目标检测***及检测方法
CN105022935A (zh) * 2014-04-22 2015-11-04 中国科学院青岛生物能源与过程研究所 一种利用dna进行信息存储的编码方法和解码方法
US9674203B2 (en) * 2015-03-16 2017-06-06 International Business Machines Corporation File and bit location authentication
CN105389481B (zh) * 2015-12-22 2018-06-29 武汉菲沙基因信息有限公司 一种三代全长转录组中可变剪切体的检测方法
CN108885648A (zh) * 2016-02-09 2018-11-23 托马生物科学公司 用于分析核酸的***和方法
CN105975811B (zh) * 2016-05-09 2019-03-15 管仁初 一种智能比对的基因序列分析装置
JP6898441B2 (ja) * 2016-10-07 2021-07-07 イルミナ インコーポレイテッド ヌクレオチド配列決定データの２次分析のためのシステムおよび方法
CN111095423B (zh) * 2017-08-25 2023-07-21 深圳华大生命科学研究院 编码/解码方法、装置和数据处理装置
WO2019133756A1 (en) 2017-12-29 2019-07-04 Clear Labs, Inc. Automated priming and library loading device
SE541799C2 (en) 2018-04-11 2019-12-17 David Yudovich Determination of frequency distribution of nucleotide sequence variants

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20050221354A1 (en) * 2004-02-18 2005-10-06 Wyeth Nucleic acid arrays for monitoring expression profiles of drug target genes

Also Published As

Publication number Publication date
ES2311958T3 (es) 2009-02-16
WO2006084391A1 (en) 2006-08-17
AU2005327056B2 (en) 2010-09-16
EP1846853A1 (de) 2007-10-24
CN101137991A (zh) 2008-03-05
US8275557B2 (en) 2012-09-25
CA2594633C (en) 2014-02-25
AU2005327056A1 (en) 2006-08-17
DE602005009406D1 (de) 2008-10-09
EP1846853B1 (de) 2008-08-27
AU2005327056A2 (en) 2006-08-17
US20080120079A1 (en) 2008-05-22
CA2594633A1 (en) 2006-08-17

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