WO2007077256A1 - Avian telomerase reverse transcriptase - Google Patents
Avian telomerase reverse transcriptase Download PDFInfo
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- WO2007077256A1 WO2007077256A1 PCT/EP2007/050120 EP2007050120W WO2007077256A1 WO 2007077256 A1 WO2007077256 A1 WO 2007077256A1 EP 2007050120 W EP2007050120 W EP 2007050120W WO 2007077256 A1 WO2007077256 A1 WO 2007077256A1
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- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
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- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/10—Transferases (2.)
- C12N9/12—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
- C12N9/1241—Nucleotidyltransferases (2.7.7)
- C12N9/1276—RNA-directed DNA polymerase (2.7.7.49), i.e. reverse transcriptase or telomerase
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- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/10—Transferases (2.)
- C12N9/12—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
Definitions
- the present invention notably relates to novel recombinant telomerase reverse transcriptases, nucleic acid molecules coding them, cells comprising said nucleic acid molecule and use of these cells for the production of substance of interest.
- telomeres consisting of a conserved, tandemly repeated, non-coding, hexameric DNA sequence associated to single- and double-stranded binding proteins. Telomeres are responsible for genome-stability functions and in particular replication of the chromosome termini. Successful chromosome end replication requires both the unique telomere structure and the specialized enzyme telomerase reverse transcriptase, which is a nucleoprotein having a reverse transcriptase enzymatic activity.
- telomere reverse transcriptase is capable to lengthen the telomere repeat array, allowing for extended replication of the complimentary daughter strand.
- telomere reverse transcriptase In cells lacking telomerase reverse transcriptase, telomeric DNA shortens on successive divisions as the DNA-synthesis enzymes are incapable of completely replicating the termini of chromosomes once the initiating RNA primer is removed. Numerous works have reported the evidence that the so called "telomere clock" is an important feature of human cell lifespan.
- the telomere hypothesis of cellular aging proposes that shortening of telomere is related to a lack of telomerase reverse transcriptase activity over and triggers chromosomal instability, leading to senescence, apoptosis.
- Telomerase reverse transcriptase activity is down- regulated in somatic cell lineages during development in vivo and in primary cells in vitro correlating with telomere shortening. Conversely, upregulation or dysregulation of telomerase reverse transcriptase activity occurs in transformed cells and tumors.
- the telomerase reverse transcriptase (TERT) cDNAs from several mammals and one amphibian were cloned and studied (Nakamura et al. 1997. Science 277, 955- 959; Greenberg et al. 1998. Oncogene 16, 1723-1730).
- TERT over-expression in a cell leads to the immortalization of said cell
- TERT activity is specie restricted.
- human TERT is incompatible with the avian telomere maintenance apparatus (Michailidis et al. 2005. Biochem Biophys Res Commun. 335 (1), 240-6). Therefore, to develop avian and more particularly anatidae cell lines, there is a need of TERT which perform in these particular cells.
- Eukaryotic cell lines are fundamental for the manufacture of viral vaccines and many products of biotechnology.
- Biologicals produced in cell cultures include enzymes, hormones, immunobiologicals (monoclonal antibodies, interleukins, lymphokines), and anticancer agents.
- immunobiologicals monoclonal antibodies, interleukins, lymphokines
- anticancer agents include enzymes, hormones, immunobiologicals (monoclonal antibodies, interleukins, lymphokines), and anticancer agents.
- many simpler proteins can be produced using bacterial cells, more complex proteins that are glycosylated, currently must be made in eukaryotic cells.
- Avian cell lines are particularly useful since many virus used in pharmaceutical composition are able to replicate on them. More noticeably, various viruses are only able to grow on avian cells. This is for example the case of Modified Virus Ankara
- MVA which is unable to grow on most of the mammalian cells.
- This poxvirus which derived from a Vaccinia Virus by more than 500 passages on CEF was used in the early seventies for vaccinating immunodeficient peoples against Variola.
- MVA is mainly used as a vector for gene therapy and immunotherapy purposes. For example,
- MVA is used as a vector for the MUCl gene for vaccinating patients against tumor expressing this antigen (Scholl et al., 2003, J Biomed BiotechnoL, 2003, 3, 194-201).
- MVA carrying the gene coding HPV antigens are also used as a vector for the therapeutic treatment of high grade cervical lesions. More recently, MVA has been the vector of choice for preparing prophylactic treatment against newly emerging diseases or probable biological weapons such as west nile virus and anthrax.
- a and “an” are used in the sense that they mean “at least one”, “at least a first”, “one or more” or “a plurality” of the referenced components or steps, unless the context clearly dictates otherwise.
- a cell includes a plurality of cells, including mixtures thereof.
- compositions and methods are intended to mean that the products, compositions and methods include the referenced components or steps, but not excluding others.
- Consisting essentially of when used to define products, compositions and methods shall mean excluding other components or steps of any essential significance. Thus, a composition consisting essentially of the recited components would not exclude trace contaminants and pharmaceutically acceptable carriers.
- Consisting of shall mean excluding more than trace elements of other components or steps.
- the present invention relates to an isolated, and/or recombinant polypeptide comprising an amino acid sequence which has at least 60% amino acid sequence identity to SEQ ID N°:l.
- the polypeptide of the invention comprises an amino acid sequence which has at least 70%, preferably at least 80% and even more preferably at least 90% amino acid sequence identity to SEQ ID N°:l.
- the polypeptide of the invention comprises the amino acid sequence set forth in SEQ ID N°:l.
- polypeptide of the invention has a TERT activity and in a more preferred embodiment of the invention the expression of the polypeptide of the invention allows the immortalization of a cell belonging to the Anatidae family.
- the term "isolated” and/or “recombinant” means that the nucleic acid molecule, DNA, RNA, polypeptides or proteins so designated have been produced in such form by the hand of man, and thus are separated from their native in vivo cellular environment.
- the recombinant DNAs, RNAS, polypeptides and proteins of the invention are useful in ways described herein that the DNAs, RNAs, polypeptides or proteins as they naturally occur are not.
- the present invention refers to an isolated nucleic acid molecule which encodes the polypeptide of the invention.
- nucleic acid molecule encoding the polypeptide of the invention comprises substantially the same nucleotide sequence as the one set forth in SEQ ID N°:2.
- Preferred nucleic acid molecules encoding the polypeptide of the invention comprise the same nucleotide sequence as the one set forth in SEQ ID N°:2.
- nucleic acid molecule having substantially the same nucleotide sequence as the reference nucleotide sequence encodes substantially the amino acid sequence set forth in SEQ ID N°:l.
- nucleic acid molecule having substantially the same nucleotide sequence as the reference nucleotide sequence has at least 70%, more preferably at least 90%, yet more preferably at least 95%, identity to the nucleotide acid sequence set forth in SEQ ID N°:2.
- Hybridization refers to the binding of complementary strands of nucleic acid
- probe:target-DNA i.e., sense:antisense strands or probe:target-DNA
- Stringency levels used to hybridize a given probe with target-DNA can be readily varied by those of skill in the art.
- stringent hybridization is used herein to refer to conditions under which polynucleic acid hybrids are stable. As known to those of skill in the art, the stability of hybrids is reflected in the melting temperature (Tm) of the hybrids. In general, the stability of a hybrid is a function of sodium ion concentration and temperature. Typically, the hybridization reaction is performed under conditions of lower stringency, followed by washes of varying, but higher, stringency. Reference to hybridization stringency relates to such washing conditions.
- moderately stringent hybridization refers to conditions that permit target-DNA to bind a complementary nucleic acid that has about 60% identity, preferably about 75% identity, more preferably about 85% identity to the target DNA; with greater than about 90% identity to target-DNA being especially preferred.
- moderately stringent conditions are conditions equivalent to hybridization in 50% formamide, 5*Denhart's solution, 5*SSPE, 0.2% SDS at 42° C, followed by washing in 0.2*SSPE, 0.2% SDS, at 65.degree. C.
- the nucleic acid molecule of the invention can be a RNA, a cDNA or genomic sequence or be of a mixed type. It can, where appropriate, contain one or more introns, with these being of native, heterologous (for example the intron of the rabbit -globin genes etc.) or synthetic origin, in order to increase expression in the host cells.
- the present invention also relates to a vector which carries a nucleic acid molecule according to the invention.
- the term "vector” is understood to mean a vector of plasmid or viral origin, and optionally such a vector combined with one or more substances improving the transfectional efficiency and/or the stability of said vector and/or the protection of said vector in vivo toward the immune system of the host organism.
- these substances are widely documented in the literature which is accessible to persons skilled in the art (see for example Feigner et al., 1987, Proc. West. Pharmacol. Soc. 32, 115- 121; Hodgson and Solaiman, 1996, Nature Biotechnology 14, 339-342; Remy et al.,
- lipids in particular cationic lipids, liposomes, nuclear or viral proteins or neutral lipids. These substances may be used alone or in combination. Examples of such compounds are in particular available in patent applications WO 98/08489, WO 98/17693, WO 98/34910, WO 98/37916,
- WO 98/53853 EP 890362 or WO 99/05183.
- a combination which may be envisaged is a plasmid recombinant vector combined with cationic lipids (DOGS, DC-CHOL, spermine-chol, spermidine-chol and the like) and neutral lipids (DOPE).
- DOGS cationic lipids
- DC-CHOL spermine-chol
- spermidine-chol spermidine-chol and the like
- DOPE neutral lipids
- plasmids which can be used in the context of the present invention are vast. They may be cloning and/or expression vectors. In general, they are known to a person skilled in the art and a number of them are commercially available, but it is also possible to construct them or to modify them by genetic engineering techniques. There may be mentioned, by way of examples, the plasmids derived from pBR322 (Gibco BRL), pUC (Gibco BRL), pBluescript (Stratagene), pREP4, pCEP4 (Invitrogene) or p Poly (Lathe et al, 1987, Gene 57, 193-201).
- a plasmid used in the context of the present invention contains a replication origin ensuring the initiation of replication in a producing cell and/or a host cell
- a replication origin for example, the CoIEl origin may be selected for a plasmid intended to be produced in E. coli and the oriP/EBNAl system may be selected if it is desired for it to be self-replicating in a mammalian host cell, Lupton and Levine, 1985, MoI. Cell. Biol. 5, 2533-2542; Yates et al., Nature 313, 812-815).
- it may comprise additional elements improving its maintenance and/or its stability in a given cell (cer sequence which promotes the monomeric maintenance of a plasmid (Summers and Sherrat, 1984, Cell 36, 1097-1103, sequences for integration into the cell genome).
- a viral vector it is possible to envisage a vector derived from a poxvirus (vaccinia virus, in particular MVA, canarypox and the like), from an adenovirus, from a retrovirus, from a herpesvirus, from an alphavirus, from a foamy virus or from an adeno-associated virus.
- a poxvirus vaccinia virus, in particular MVA, canarypox and the like
- an adenovirus from a retrovirus
- from a herpesvirus from an alphavirus
- foamy virus from a foamy virus or from an adeno-associated virus.
- a nonreplicative vector will preferably be used.
- the adenoviral vectors are most particularly suitable for carrying out the present invention.
- the vector according to the invention further comprises the elements necessary for the expression of the nucleic acid molecule of the invention in an host cell.
- the elements necessary for the expression consist of the set of elements allowing the transcription of the nucleotide sequence to RNA and the translation of the mRNA to a polypeptide, in particular the promoter sequences and/or regulatory sequences which are effective in said cell, and optionally the sequences required to allow the excretion or the expression at the surface of the target cells for said polypeptide.
- These elements may be regulatable or constitutive.
- the promoter is adapted to the vector selected and to the host cell.
- ⁇ -1 antitrypsin CFTR
- the promoters of the gene encoding muscle creatine kinase actin pulmonary surfactant, immunoglobulin or ⁇ -actin (Tabin et al., 1982, MoI. Cell Biol. 2, 416-436), SRa (Takebe et al., 1988, MoI. Cell.
- the SV40 virus (Simian Virus) early promoter the RSV (Rous Sarcoma Virus) LTR, the MPSV promoter, the TK-HSV-I promoter, the CMV virus (Cytomegalovirus) early promoter, the vaccinia virus promoters p7.5K pH5R, pKIL, p28, pi 1 and the adenoviral promoters ElA and MLP or a combination of said promoters.
- the Cytomegalovirus (CMV) early promoter is most particularly preferred.
- the vector of the invention further comprises two sequences which are homologous with sequence portions contained within a region of a target DNA sequence native to the genome of a cell genome.
- the presence of said homologous sequences allows the site specific insertion of the nucleic acid molecule of the invention into the target DNA sequence by homologous recombination.
- homologous recombination refers to the exchange of DNA fragments between two DNA molecules at the site of essentially identical nucleotide sequences.
- the homologous sequences in the vector are hundred percent homologous to the region of the target sequence.
- lower sequence homology can be used.
- sequence homology as low as about 80% can be used.
- the homologous sequences in the vector comprise at least 25bp, longer regions are preferred, at least 500 bp and more preferably at least 5000 bp.
- the nucleic acid molecule is surrounded by the homologous sequences in the vector.
- surrounded means that one of the homologous sequences is located upstream of the nucleic acid molecule of the invention and that one of the homologous sequences is located downstream of the nucleic acid molecule of the invention. As used herein, "surrounded” does not necessarily mean that the two homologous sequences are directly linked to the 3' or to the 5' end of the nucleic acid molecule of the invention, the nucleic acid molecule of the invention and the homologous sequences can be separated by an unlimited number of nucleotides.
- a "target DNA sequence” is a region within the genome of a cell which is targeted for modification by homologous recombination with the vector.
- Target DNA sequences include structural genes (i.e., DNA sequences encoding polypeptides including in the case of eucaryotes, introns and exons), regulatory sequences such as enhancers sequences, promoters and the like and other regions within the genome of interest.
- a target DNA sequence may also be a sequence which, when targeted by a vector has no effect on the function of the host genome.
- inserted into a target DNA sequence widely means that the homologous recombination process which leads to the insertion of the nucleic acid molecule of the invention introduces a deletion or a disruption into the targeted DNA sequence.
- one homologous sequence can be homologous to a part of the targeted DNA sequence, wherein the other homologous sequence is homologous to a DNA sequence located upstream or downstream the targeted sequence.
- one of the homologous sequences can be homologous to a DNA sequence located upstream the targeted DNA sequence, wherein the other homologous sequence is homologous to a DNA sequence located downstream the target DNA sequence.
- both the homologous sequences are homologous to sequences located into the target DNA sequence.
- the target DNA sequence is the HPRT (Hypoxanthine phosphorybosyl transferase) gene.
- the genomic sequence comprising the HPRT promoter and the HPRT gene of cairina moschata is set forth in SEQ ID N°:3.
- the sequence coding the HPRT start at the ATG codon in position 8695 of the nucleic acid sequence set forth in SEQ ID N°:3, the sequence upstream this ATG codon is the HPRT promoter sequence.
- the one skilled in the art is able to choose the homologous sequences necessary for the integration of the nucleic acid molecule of the invention into the HPRT gene.
- the genomic sequences coding HPRT are highly homologous among avians, the one skilled in the art is thus able to design the homologous sequences necessary to target the HPRT gene of other avian cells.
- the homologous sequences are customized in order to insert the nucleic acid molecule of the invention downstream the HPRT promoter.
- the nucleic acid molecule of the invention is operably linked to the cell's endogenous HPRT promoter.
- operably linked is intended to mean that the nucleic acid molecule is linked to the promoter in a manner which allows for its expression in the cell.
- the homologous sequence upstream the nucleic acid molecule of the invention, has preferably a nucleic acid sequence which is homologous with at least 500 contiguous bp and more preferably at least 5000 contiguous bp of the nucleic acid sequence starting from the nucleotide at position 1 and ending with the nucleotide at position 8694 of the nucleic acid sequence set forth in SEQ ID N°:3, with the proviso that said homologous sequence is not homologous with the nucleic acid sequence starting with the nucleotide at position 8695 and ending with the nucleotide at position 26916 of the nucleic acid sequence set forth in SEQ ID N°:3.
- this upstream homologous sequence is preferably directly linked to the start codon of the nucleic acid molecule according to this invention.
- the homologous sequence upstream the nucleic acid molecule of the invention consists in the nucleic acid sequence starting from the nucleotide at position 1383 and ending with the nucleotide at position 8694 of the nucleic acid sequence set forth in SEQ ID N°:3.
- the vector according to the invention comprises the nucleic acid sequence starting from the nucleotide at position 1 and ending with the nucleotide at position 11227 of the nucleic acid sequence set forth in SEQ ID N°:4.
- the homologous sequence, downstream the nucleic acid molecule of the invention preferably has a nucleic acid sequence which is homologous with at least 500 contiguous bp and more preferably at least 5000 contiguous bp of the nucleic acid sequence starting from the nucleotide at position 10581 and ending with the nucleotide at position 17800 of the nucleic acid sequence set forth in SEQ ID N°:3. And more preferably, said homologous sequence, downstream the nucleic acid molecule of the invention, consists in the nucleic acid sequence starting from the nucleotide at position 10581 and ending with the nucleotide at position 17800 of the nucleic acid sequence set forth in SEQ ID N°:3.
- the vector of the invention comprises a first selection marker, wherein this first selection marker is a positive selection marker and wherein said first selection marker and the nucleic acid molecule of the invention are positioned in the same section of the vector, said section being delimited by the homologous sequences.
- the term "positive selection marker” notably refers to a gene encoding a product that enables only the cells that carry the gene to survive and/or grow under certain conditions.
- Typical selection markers encode proteins that confer resistance to antibiotics or other toxins, e.g., ampicillin, neomycin, methotrexate, or tetracycline, complement auxotrophic deficiencies, or supply critical nutrients not available from complex media.
- the first selection marker encodes a protein that confers resistance to antibiotics.
- the first selection marker in the vector, is surrounded by sequences allowing its suppression. Said sequences allowing the suppression of the first selection marker do not surround the nucleic acid molecule of the invention.
- the sequences allowing the suppression of the first selection marker, the first selection marker and the nucleic acid molecule of the invention are positioned in the same section of the transfer vector, said section being delimited by the homologous sequences.
- Sequences allowing the suppression of a nucleic acid fragment are well known to the one skilled in the art (Nunes-Duby, S. et al (1998) Nucleic Acids Res. 26:391- 406). These sequences can be recognized by one or more specific enzymes which induce the suppression of the nucleic acid comprised between said sequences, these enzymes are called "recombinase". For example, three well-known recombinases allowing the suppression of a nucleic acid fragment are the FLP, ISCEI and Cre recombinases.
- Cre A typical site-specific recombinase is Cre recombinase.
- Cre is a 38-kDa product of the cre (cyclization recombination) gene of bacteriophage Pl and is a site-specific DNA recombinase of the Int family. Sternberg, N. et al. (1986) J. MoL Biol. 187: 197- 212.
- Cre recognizes a 34-bp site on the Pl genome called loxP (locus of X-over of Pl) and efficiently catalyzes reciprocal conservative DNA recombination between pairs of Io xP sites.
- the loxP site consists of two 13-bp inverted repeats flanking an 8-bp nonpalindromic core region.
- Cre-mediated recombination between two directly repeated loxP sites results in excision of DNA between them as a covalently closed circle. Cre- mediated recombination between pairs of loxP sites in inverted orientation will result in inversion of the intervening DNA rather than excision. Breaking and joining of DNA is confined to discrete positions within the core region and proceeds on strand at a time by way of transient phophotyrosine DNA-protein linkage with the enzyme.
- I-Scel Another site-specific recombinase is the I-Scel.
- Other intron-homing endonuclease for instance I-Tlil, I-Ceul, I-Crel, I-Ppol and PI-PspI, can also be substituted for I-Scel. Many are listed by Belfort and Roberts ((1997) Nucleic Acids Research 25:3379-3388). Many of these endonucleases derive from organelle genomes in which the codon usage differs from the standard nuclear codon usage. To use such genes for nuclear expression of their endonucleases it may be necessary to alter the coding sequence to match that of nuclear genes.
- I-Scel is a double-stranded endonuclease that cleaves DNA within its recognition site. I-Scel generates a 4 bp staggered cut with 3 'OH overhangs.
- the enzyme I-Scel has a known recognition site.
- the recognition site of I-Scel is a non-symmetrical sequence that extends over 18 bp.
- the sequences allowing the suppression of the first selection marker comprises the recognition site of I-Scel.
- FLP recombinase Another site-specific recombinase is the FLP recombinase.
- FIp recombinase recognizes a distinct 34-bp minimal site which tolerates only limited degeneracy of its recognition sequence (Jayaram, 1985; Senecoff et al., 1988). The interaction between
- said vector of the invention comprises sequences allowing the suppression of the first selection marker
- said vector can advantageously comprises a first homology sequence A and a second homology sequence B, wherein the homology sequences A and B have a sufficient length and a sufficient homology that allows for homologous recombination between them.
- sufficient homology preferably refers to sequences with at least 70%, preferably 80%, by preference at least 90%, especially preferably at least 95%, very especially preferably at least 99%, most preferably 100%, homology within these homology sequences over a length of at least 20 base pairs, preferably at least 50 base pairs, especially preferably at least 100 base pairs, very especially preferably at least 250 base pairs, most preferably at least 500 base pairs.
- the vector of the invention comprises in the 5'- to 3'-orientation as follows the nucleic acid molecule of the invention, the first homology sequence A, a sequence allowing the suppression of the first selection marker, the first selection marker, a sequence allowing the suppression of the first selection marker and the homology sequence B.
- the vector of the invention comprises a second selection marker which is not surrounded by said homologous sequences, wherein said second selection marker is a negative selection marker.
- Said second selection marker is particularly useful when the vector of the invention is circular.
- the fact that the second selection marker is not surrounded by said homologous sequences means that the second selection marker and the nucleic acid molecule of the invention are not positioned in the same section of the transfer vector, said section being delimited by the homologous sequences.
- the vector of the invention comprises a third selection marker wherein said third selection marker is a negative selection marker and wherein said third selection marker is located between the sequences allowing the suppression of the first selection marker.
- the fact that the third selection marker is located between the sequences allowing the suppression of the first selection marker means that the third selection marker and the first selection marker are positioned in the same section of the transfer vector, said section being delimited by the sequences allowing the suppression of the first selection marker.
- negative selection marker notably refers to a gene encoding a product that kills the cells that carry the gene under certain conditions. These genes notably comprise "suicide gene”. The products encoded by these genes are able to transform a prodrug in a cytotoxic compound. Numerous suicide gene/prodrug pairs are currently available. There may be mentioned more particularly the pairs:
- HSV-I TK herpes simplex virus type I thymidine kinase
- GCV acyclovir or ganciclovir
- the first, second and third selections marker can be used separately.
- the vector of the invention can comprise the first and the third selection markers but not the second one, or the second and the third selection markers but not the first one.
- the first, the second and/or the third selection marker are placed under the control of the elements necessary for their expression in an host cell.
- the elements necessary for the expression consist of the set of elements allowing the transcription of the nucleotide sequence to RNA and the translation of the mRNA to a polypeptide, in particular the promoter sequences and/or regulatory sequences which are effective in said cell, and optionally the sequences required to allow the excretion or the expression at the surface of the host cells for said polypeptide.
- These elements may be regulatable or constitutive.
- the promoter is adapted to the vector selected and to the host cell.
- ⁇ -1 antitrypsin CFTR
- the promoters of the gene encoding muscle creatine kinase actin pulmonary surfactant, immunoglobulin or ⁇ -actin (Tabin et al., 1982, MoI. Cell Biol. 2, 416-436), SRa (Takebe et al., 1988, MoI. Cell.
- the present invention also relates to a cell transfected by a nucleic acid molecule or a vector according to the invention and cells deriving there from.
- the term "derived" refers to cells which develop or differentiate from or have as ancestor a cell transfected by a nucleic acid molecule according to the invention.
- the present invention also relates to the use of the polypeptides, nucleotide acid molecules and vectors according to the invention for the immortalization of a cell.
- the present invention also relates to a cell comprising the nucleic acid molecule of the invention, wherein said nucleic acid molecule is operably linked to the cell's endogenous HPRT promoter.
- operably linked is intended to mean that the nucleic acid molecule is linked to the promoter in a manner which allows for its expression in the cell.
- the cell according to the invention comprise the nucleic acid sequence set forth in SEQ ID N°:4.
- the present invention also relates to a process for immortalizing a cell comprising the step of transfecting a vector according to the invention into said cell.
- An immortalized cell refers to a cell capable of growing in culture for more than 35 passages.
- passage number refers to the number of times that a cell population has been removed from the culture vessel and undergone a subculture (passage) process, in order to keep the cells at a sufficiently low density to stimulate further growth.
- transfected refers to the stable transfection or the transient transfection of the cell of the invention.
- stable transfection or "stably transfected” refers to the introduction and integration of foreign DNA into the genome of the transfected cell.
- stable transfectant refers to a cell that has stably integrated foreign DNA into the genomic DNA.
- transient transfection or “transiently transfected” refers to the introduction of foreign DNA into a cell where the foreign DNA fails to integrate into the genome of the transfected cell.
- the foreign DNA persists in the nucleus of the transfected cell for several days.
- transient transfectant refers to cells that have taken up foreign DNA but have failed to integrate this DNA.
- the cell of the invention derives from an avian cell and more preferably from a cell of the Anatidae family or of the Phasianidae family.
- Anatidae cells belonging to the Cairina or Anas genus are particularly preferred.
- the cells according to the invention belong to the Cairina moschata or to the Anas platyrhynchos species.
- the cell according to the invention derives from an embryonic organism.
- Methods allowing the isolation of cells from a living organism are well known to the one skilled in the art.
- methods disclosed in example 2 can be used.
- the primary cell is isolated from an embryo belonging to the Anatidae family which is between 0 and 20 days old, more preferably between 5 and 15 days old and even more preferably between 11 and 14 days old.
- the vector used in the process of the invention comprises a first selection marker.
- the integration of the first selection marker allows the selection of the cells that have incorporated the nucleic acid molecule of the invention.
- the process according to the invention can further comprise a step wherein said cells are cultivated in a medium which only allows the growth of the cells which have incorporated the first selection marker. For example in a medium which comprises an antibiotic.
- the process according to the invention can further comprise a step consisting in suppressing the first selection marker from the genome of said primary cell.
- the cell is transfected by the gene coding the recombinase specific for the sequences allowing the suppression of the first selection marker.
- the process according to the invention can further comprise a step wherein the cells are cultivated in a medium which only allows the growth of the cells which have not incorporated the second selection marker. Said step can be made simultaneously with or separately from the step wherein said cells are cultivated in a medium which only allows the growth of the cells which have incorporated the first selection marker.
- Said second selection marker is particularly useful when the vector, used in the process according to the invention, is circular.
- the presence of said second selection marker allows the destruction of the cells in which the homologous recombination process has lead to the introduction of the section of the transfer vector that does not comprise the nucleic acid molecule of the invention.
- the process according to the invention can further comprise a step in which said cell is cultivated in a medium which does not allow the growth of the cells comprising the third selection marker.
- a medium, which does not allow the growth of the cells comprising FCUl as a third selection marker comprises 5-Fluorocytosine.
- This step allows the selection of the cells in which the suppression of the first selection marker has occurred. This means that the step consisting in suppressing the first selection marker will also lead to the suppression of the third selection marker. The presence of the third selection marker allows the destruction of the cells in which the first selection marker is present.
- the present invention more particularly relates, but is not limited to a process for immortalizing a cell comprising the steps :
- ⁇ a nucleic acid molecule according to the invention surrounded by homologous sequences.
- a first selection marker wherein said first selection marker is a positive selection marker and wherein said first selection marker is surrounded by said homologous sequences.
- a third selection marker wherein said third selection marker is a negative selection marker and wherein said third selection marker is located between the sequences allowing the suppression of the first selection marker.
- the invention relates to an immortalized cell which derives from a cell of an animal belonging to the Cairina moschata species and which comprises the Cairina moschata telomerase reverse transcriptase, under the control of the Cairina moschata HPRT promoter, inserted into the HPRT gene of the cell.
- the cell according to the invention can further comprise one or more nucleic acid sequence allowing the propagation of a defective virus.
- "Defective virus” refers to a virus in which one or more viral gene necessary for its replication are deleted or rendered nonfunctional.
- nucleic acid sequence allowing the propagation of a defective virus refers to a nucleic acid sequence supplying in trans the function(s) which allows the replication of the defective virus. In other words, said nucleic acid sequence(s) codes the proteins(s) necessary for the replication and encapsidation of said defective virus.
- the cell according to the invention can be trans fected transiently or permanently with a nucleic acid sequence coding the El region.
- the cell according to the invention can also comprise a nucleic acid sequence coding a substance of interest.
- a substance of interest may include, but is not limited to, a pharmaceutically active protein, for example growth factors, growth regulators, antibodies, antigens, their derivatives useful for immunization or vaccination and the like, interleukins, insulin, G-CSF, GM-CSF, hPG-CSF, M-CSF or combinations thereof, interferons, for example, interferon- ⁇ , interferon- ⁇ , interferon- , blood clotting factors, for example, Factor VIII, Factor IX, or tPA or combinations thereof.
- “Substance of interest” also refers to industrial enzymes, for example for use within pulp and paper, textile modification, or ethanol production.
- “substance of interest” also refers to protein supplement or a value-added product for animal feed.
- the cells obtained by the process according to the invention, the cell of the invention and the cells derived thereof are notably useful for the replication of a virus.
- Said viruses can be live, attenuated, recombinant or not. More preferably, said cells are particularly useful for the replication of poxvirus (vaccinia virus, in particular MVA, canarypoxvirus, etc.), an adenovirus, a retrovirus, an herpesvirus, an alphavirus, a foamy virus or from an adenovirus-associated virus.
- Retroviruses have the property of infecting, and in most cases integrating into, dividing cells and in this regard are particularly appropriate for use in relation to cancer.
- a recombinant retrovirus according to the invention generally contains the LTR sequences, an encapsidation region and the nucleotide sequence according to the invention, which is placed under the control of the retroviral LTR or of an internal promoter such as those described below.
- a retroviral vector may contain modifications, in particular in the LTRs (replacement of the promoter region with a eukaryotic promoter) or the encapsidation region (replacement with a heterologous encapsidation region, for example the VL30 type) (see French applications 94 08300 and 97 05203).
- Adenoviral vector can lacks all or part of at least one region which is essential for replication and which is selected from the El, E2, E4 and Ll L5 regions.
- a deletion of the El region is preferred. However, it can be combined with (an)other modification(s)/deletion(s) affecting, in particular, all or part of the E2, E4 and/or Ll L5 regions.
- deletion of the major part of the El region and of the E4 transcription unit is very particularly advantageous.
- the adenoviral vector can additionally lack all or part of the non- essential E3 region.
- a minimal adenoviral vector which retains the sequences which are essential for encapsidation, namely the 5' and 3' ITRs (Inverted Terminal Repeat), and the encapsidation region.
- the various adenoviral vectors, and the techniques for preparing them, are known (see, for example, Graham and Prevect, 1991, in Methods in Molecular Biology, VoI 7, p 109 128; Ed: E. J. Murey, The Human Press Inc).
- Poxvirus family comprises viruses of the Chordopoxvirus and Entomopoxvirus subfamilies.
- the poxvirus according to the invention is preferably chosen from the group comprising Orthopoxviruses, Parapoxviruses, Avipoxviruses, Capripoxviruses, Leporipoxviruses, Suipoxviruses, Molluscipoxviruses, Yatapoxviruses.
- the poxvirus of the invention is an orthopoxvirus.
- the Orthopoxvirus is preferably a vaccinia virus and more preferably a modified vaccinia virus Ankara (MVA) in particular MVA 575 (ECACC VOO 120707) and MVA- BN (ECACC V00083008).
- MVA modified vaccinia virus Ankara
- recombinant virus refers to a virus comprising an exogenous sequence inserted in its genome.
- an exogenous sequence refers to a nucleic acid which is not naturally present in the parent virus.
- the exogenous sequence encodes a molecule having a directly or indirectly cytotoxic function.
- directly or indirectly cytotoxic we mean that the molecule encoded by the exogenous sequence may itself be toxic (for example ricin, tumour necrosis factor, inter leukin-2, interferon-gamma, ribonuclease, deoxyribonuclease, Pseudomonas exotoxin A) or it may be metabolised to form a toxic product, or it may act on something else to form a toxic product.
- the sequence of ricin cDNA is disclosed in Lamb et al (Eur. J. Biochem., 1985, 148, 265-270) incorporated herein by reference.
- the exogenous sequence is a suicide gene.
- a suicide gene encodes a protein able to convert a relatively non-toxic prodrug to a toxic drug.
- the enzyme cytosine deaminase converts 5-fluorocytosine (5FC) to 5-fluorouracil (5FU) (Mullen et al (1922) PNAS 89, 33); the herpes simplex enzyme thymidine kinase sensitises cells to treatment with the antiviral agent ganciclovir (GCV) or aciclovir (Moolten (1986) Cancer Res. 46, 5276; Ezzedine et al (1991) New Biol 3, 608).
- the cytosine deaminase of any organism for example E. coli or Saccharomyces cerevisiae, may be used.
- the gene encodes a protein having a cytosine deaminase activity and even more preferably a protein as described in patent applications WO2005007857 and WO9954481.
- the exogenous gene encodes a ribozyme capable of cleaving targeted RNA or DNA.
- the targeted RNA or DNA to be cleaved may be RNA or DNA which is essential to the function of the cell and cleavage thereof results in cell death or the RNA or DNA to be cleaved may be RNA or DNA which encodes an undesirable protein, for example an oncogene product, and cleavage of this RNA or DNA may prevent the cell from becoming cancerous.
- the exogenous gene encodes an antisense RNA.
- antisense RNA we mean an RNA molecule which hybridises to, and interferes with the expression from a mRNA molecule encoding a protein or to another RNA molecule within the cell such as pre-mRNA or tRNA or rRNA, or hybridises to, and interferes with the expression from a gene.
- the exogenous sequence replaces the function of a defective gene in a target cell.
- cystic fibrosis where there is known to be a mutation in the CFTR gene
- Duchenne muscular dystrophy where there is known to be a mutation in the dystrophin gene
- sickle cell disease where there is known to be a mutation in the HbA gene.
- Many types of cancer are caused by defective genes, especially protooncogenes, and tumour-suppressor genes that have undergone mutation.
- protooncogenes are ras, src, bcl and so on; examples of tumour- suppressor genes are p53 and Rb.
- the exogenous sequence encodes a Tumor Associated Antigen (TAA).
- TAA refers to a molecule that is detected at a higher frequency or density in tumor cells than in non- tumor cells of the same tissue type. Examples of TAA includes but are not limited to CEA, MART-I, MAGE-I, MAGE-3, GP-100, MUC-I, MUC-2, pointed mutated ras oncogene, normal or point mutated p53, overexpressed p53, CA- 125, PSA, C-erb/B2, BRCA I, BRCA II, PSMA, tyrosinase, TRP-I, TRP-2, NY-ESO-I, TAG72, KSA, HER-2/neu, bcr-abl, pax3-fkhr, ews-fii-1, surviving and LRP. According to a more preferred embodiment the TAA is MUCl.
- the recombinant virus can comprise more than one exogenous sequence and each exogenous sequence can encodes more than one molecule.
- each exogenous sequence can encodes more than one molecule.
- it can be useful to associate in a same recombinant poxvirus, an exogenous sequenced coding a TAA with an exogenous sequence coding a cytokine.
- the exogenous gene encodes an antigen.
- antigen refers to a ligand that can be bound by an antibody; an antigen need not itself be immunogenic.
- the antigen is derived from a virus such as for example HIV-I, (such as gp 120 or gp 160), any of Feline Immunodeficiency virus, human or animal herpes viruses, such as gD or derivatives thereof or Immediate Early protein such as ICP27 from HSVl or HSV2, cytomegalovirus (such as gB or derivatives thereof), Varicella Zoster Virus (such as gpl, II or III), or from a hepatitis virus such as hepatitis B virus for example Hepatitis B Surface antigen or a derivative thereof, hepatitis A virus, hepatitis C virus (preferentially non structural protein from genotype Ib strain ja) and hepatitis E virus, or from other viral pathogens, such as Respiratory Syncytial Virus, Human Papilloma Virus (preferentially the E6 and E7 protein from the HPV 16 strain) or Influenza virus, or derived from bacterial pathogens
- Figure 1 Vector comprising a gene coding the telomerase reverse transcriptase.
- Figure 2 Schematic representation of the site specific insertion of the gene coding the telomerase reverse transcriptase into the HPRT gene.
- Figure 3 Schematic representation of the elimination of the first and the third selection marker from the genome of the immortalized cell obtained by the process of the invention.
- a plasmid comprising two 5kb fragments homologous to the Cairina moschata
- HPRT gene surrounding the cairina moschata telomerase reverse transcriptase gene and two selection markers has been constructed.
- the HPRT gene encoding for the hypoxanthine guanine phosphoryl transferase has been selected as an adequate site for the constitutive expression of the cairina moschata telomerase.
- Neomycin resistance and FCU-I expression cassette are surrounded by Seel cleavage sites that allow the elimination of the selection cassettes from the final cell line.
- a selection marker coding the HSVTK driven by an RSV promoter ( Figure 2).
- Example 2 Preparation of CEC batch from 12 old Cairina moschata eggs and subpopulations description.
- the remaining cells were concentrated at 10 7 cell/mL in appropriate media (60%BME,
- Cells remained in culture are passaged classically up to 18 passages, during the 3 first passages non attached cells are collected by low centrifuging the conditioned media, reseeded and further passaged in the same way as the initial culture.
- Subpopulations displaying characteristic different morphological features, have been reproducibly isolated during the culture's lifespan.
- tranfection methods are known in the art to introduce a vector capable of directing expression of a nucleotide sequence of interest.
- CaPO 4 precipitation electroporation, lipofectin transfection method.
- a given example is based on CaPO 4 precipitation procedure.
- Cells should be around 80-50% confluency.
- the medium is change two hours before CaPO4/DNA addition.
- the 30 ⁇ g DNA is resuspended in 31 ⁇ l2M CaCl2 - 161.3 mM Tris pH 7.6. H 2 O is added to a final volume of 0.5 ml.
- 0.5 ml of 2X HEBS is distributed in 15 ml sterile Falcon tube and the DNA solution is added drop wise while gently vortexing or bubbling the DNA solution in.
- the solution should become milky.
- the mix is let stand at room temperature for 10-30 min.
- pipette in and out once with sterile pipette in tissue culture cabinet to break up flakes and apply drop wise to cells.
- Cells are then incubated between 6 hours to overnight at 37°C. A fine precipitate should cover the cell surface.
- the glycerol shock solution In order to complete the transfection procedure warm up to 37°C the glycerol shock solution.
- the medium is aspirate off, 5 ml BME is added to wash the cell layer, the medium is then aspirate off and 1 ml glycerol shock solution is added for 2 min or less. Subsequently 10 ml BME are added gently to dilute the glycerol and BME-glycerol is completely removed. 10 ml of desired medium is then added and plates are incubated at the appropriate temperature.
- Example 4 Methods of selection.
- Selection pressure is applied 48 hours after transfection : cells are dissociated with TrypLE select, low speed centrifuged and reseeded in BME with FCS 10%, and G418 800 ⁇ g/mL.
- telomere activity quantification with TRAPeze® XL telomerase detection kit (S7707, Chemicon) and southern blot analysis to establish the integration in the targeted specific locus.
- Selection pressure is applied 48 hours after transfection : cells are dissociated with TrypLE select, low speed centrifuged and reseeded in BME with FCS 10%, Ganciclovir 25 ⁇ g/mL, and G418 800 ⁇ g/mL.
- telomere activity quantification with TRAPeze® XL telomerase detection kit (S7707, Chemicon) and southern blot analysis oligos to establish the integration in the targeted specific locus.
- Cell clones with detected restored telomerase activity and targeted HPRT locus integration are subsequently transfected with a meganuclease I-Scel expression plasmid following the method described below.
- 5-Fluorocytosine 5-FC is applied 48 hours after transfection : cells are dissociated with TrypLE select, low speed centrifuged and reseeded in media with 5 -FC concentration ranging from 10 "3 to 10 "7 M and maintained G418 selection (BME with FCS 10%, 5-FC, and G418 800 ⁇ g/mL).
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Abstract
Description
Claims
Priority Applications (14)
Application Number | Priority Date | Filing Date | Title |
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AU2007204024A AU2007204024B2 (en) | 2006-01-05 | 2007-01-05 | Avian telomerase reverse transcriptase |
EP07703676A EP1979474B1 (en) | 2006-01-05 | 2007-01-05 | Avian telomerase reverse transcriptase |
DK07703676.2T DK1979474T3 (en) | 2006-01-05 | 2007-01-05 | Avian telomerase reverse transcriptase |
CA2636329A CA2636329C (en) | 2006-01-05 | 2007-01-05 | Avian telomerase reverse transcriptase |
DE602007008360T DE602007008360D1 (en) | 2006-01-05 | 2007-01-05 | AVIENT TELOMERASE REVERSE TRANSCRIPTASE |
BRPI0706836-0A BRPI0706836B1 (en) | 2006-01-05 | 2007-01-05 | VECTOR, USE OF A VECTOR, USE OF AN AVIAN CELL AND IMMORTALIZATION PROCESS OF AN AVIAN CELL |
SI200730331T SI1979474T1 (en) | 2006-01-05 | 2007-01-05 | Avian telomerase reverse transcriptase |
PL07703676T PL1979474T3 (en) | 2006-01-05 | 2007-01-05 | Avian telomerase reverse transcriptase |
KR1020087018929A KR101337377B1 (en) | 2006-01-05 | 2007-01-05 | Avian Telomerase Reverse Transcriptase |
US12/159,930 US9024003B2 (en) | 2006-01-05 | 2007-01-05 | Avian telomerase reverse transcriptase |
AT07703676T ATE477321T1 (en) | 2006-01-05 | 2007-01-05 | AVIARY TELOMERASE REVERSE TRANSCRIPTASE |
JP2008549016A JP5661243B2 (en) | 2006-01-05 | 2007-01-05 | Tritelomerase reverse transcriptase |
HK09102511.7A HK1122069A1 (en) | 2006-01-05 | 2009-03-17 | Avian telomerase reverse transcriptase |
HR20100484T HRP20100484T1 (en) | 2006-01-05 | 2010-09-03 | Avian telomerase reverse transcriptase |
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EP06360001.9 | 2006-01-05 | ||
EP06360047.2 | 2006-10-13 | ||
EP06360047 | 2006-10-13 |
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EP (1) | EP1979474B1 (en) |
JP (2) | JP5661243B2 (en) |
KR (1) | KR101337377B1 (en) |
CN (1) | CN102268413A (en) |
AT (1) | ATE477321T1 (en) |
AU (1) | AU2007204024B2 (en) |
BR (1) | BRPI0706836B1 (en) |
CA (1) | CA2636329C (en) |
CY (1) | CY1110860T1 (en) |
DE (1) | DE602007008360D1 (en) |
DK (1) | DK1979474T3 (en) |
HK (1) | HK1122069A1 (en) |
HR (1) | HRP20100484T1 (en) |
PL (1) | PL1979474T3 (en) |
PT (1) | PT1979474E (en) |
RS (1) | RS51525B (en) |
RU (1) | RU2415867C2 (en) |
SI (1) | SI1979474T1 (en) |
WO (1) | WO2007077256A1 (en) |
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EP1979474A1 (en) | 2008-10-15 |
DE602007008360D1 (en) | 2010-09-23 |
RS51525B (en) | 2011-06-30 |
SI1979474T1 (en) | 2010-10-29 |
RU2415867C2 (en) | 2011-04-10 |
KR101337377B1 (en) | 2013-12-09 |
RU2008125815A (en) | 2010-02-10 |
JP5661243B2 (en) | 2015-01-28 |
HK1122069A1 (en) | 2009-05-08 |
ATE477321T1 (en) | 2010-08-15 |
PL1979474T3 (en) | 2011-01-31 |
JP2013027397A (en) | 2013-02-07 |
AU2007204024A1 (en) | 2007-07-12 |
BRPI0706836A2 (en) | 2011-04-05 |
HRP20100484T1 (en) | 2010-10-31 |
CA2636329A1 (en) | 2007-07-12 |
JP2009521945A (en) | 2009-06-11 |
US20100173378A1 (en) | 2010-07-08 |
DK1979474T3 (en) | 2010-09-20 |
WO2007077256B1 (en) | 2007-10-25 |
BRPI0706836B1 (en) | 2021-05-25 |
CN102268413A (en) | 2011-12-07 |
CY1110860T1 (en) | 2015-06-10 |
US9024003B2 (en) | 2015-05-05 |
AU2007204024B2 (en) | 2012-01-19 |
PT1979474E (en) | 2010-10-22 |
EP1979474B1 (en) | 2010-08-11 |
CA2636329C (en) | 2016-12-13 |
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