CA2024720A1 - Rna with endoribonuclease activity for mrna of ripening genes, the preparation thereof and the use thereof in plants - Google Patents

Rna with endoribonuclease activity for mrna of ripening genes, the preparation thereof and the use thereof in plants

Info

Publication number
CA2024720A1
CA2024720A1 CA002024720A CA2024720A CA2024720A1 CA 2024720 A1 CA2024720 A1 CA 2024720A1 CA 002024720 A CA002024720 A CA 002024720A CA 2024720 A CA2024720 A CA 2024720A CA 2024720 A1 CA2024720 A1 CA 2024720A1
Authority
CA
Canada
Prior art keywords
rna
ribozyme
nucleotides
plant
sequence
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
CA002024720A
Other languages
French (fr)
Inventor
Bernardus Uijtewaal
Rudolf Schneider
Eugen Uhlmann
Hubert Mullner
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Hoechst AG
Original Assignee
Hoechst AG
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Hoechst AG filed Critical Hoechst AG
Publication of CA2024720A1 publication Critical patent/CA2024720A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8242Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
    • C12N15/8243Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
    • C12N15/8249Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving ethylene biosynthesis, senescence or fruit development, e.g. modified tomato ripening, cut flower shelf-life

Landscapes

  • Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Chemical & Material Sciences (AREA)
  • Zoology (AREA)
  • Biomedical Technology (AREA)
  • Wood Science & Technology (AREA)
  • General Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Plant Pathology (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Cell Biology (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Nutrition Science (AREA)
  • Breeding Of Plants And Reproduction By Means Of Culturing (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Saccharide Compounds (AREA)

Abstract

Abstract of the disclosure HOE 89/F 295 RNA with endoribonuclease activity, the preparation thereof and the use thereof Ribozyme genes or gene fragments can be synthesized on the basis of the cDNA of ripening genes. They are then inserted into plant cells and expressed there, which brings about almost complete inhibition of the ripening enzymes.

Description

% ~ ?
HOECHST AKTIENGESELLSCHAFT HOE 89/F 295 Dr. ~H/pe Description RNA with endoribonuclease activity for ~RNA of ripening gene , the preparation thereof ~nd ~he u~e thereof in plant~

Under certain condition~, RNA molecule6 are able, without involvement of protein~, to catalyze reactions on other RNA molecules or to eliminate autocatalytically fra~ments from their own molecules. Thus, there is autocatalytic deletion of an intron containing 413 nucleotides from the 3~ end of the 23s rRNA of Tetrahymena thermophila, and conversion into a circular form. This takes place by a series of phosphoester tran~fer reactions in which guanosine cofactors are involved (Cech,`T.R., Nature 30, 578-583 (1983)). Dependiny on the RNA su~strate or the chosen reaction conditions, the intron can function a~
~pecific ribonuclease, terminal transferase, phospho-transferase or acid pho~phatase. Moreover, one RNA
molecule i5 able to carry ~ut a number of conversions without it~elf being changed andt in this re~pect, behaves like an enzyme. This is why the term ribozyme has been coined for RNA molecules wit:h the~e properties.

SLmilar reactions without involvement of pr~teins have also been demonstrated for ~ome Yiroidal RNAs a~d ~atel-lite ~NA~. ~hus, self-procsssing appears to be an essenti21 reaction for replication of avocado 6unb1o~ch viroid (ASBV) ~Hutchins, C.J. et al. Nucleic A~id~ Res.
14, 3627-3640 (1986~), satellite ~NA of tobacco ring~pot virus (~TobRV) (Prody, G.A. et al., Science 231, 1577-1580 (1986)) and ~atellite ~NA of lucerne tran~ient streak virus (sLTSV) (Forster A.C. et al., Cell 49, 211-220 (1987)~. It i~ ~upposed that circular forms ~re produced durin~ the replication of these RNAs and lead, as templates, to the synthesis of RNA~ with exten ions.
~hese transcripts are cut to the ~orrect genome length by the self-cataly~ed endonucleolytic reactions.
The structures of the RNA5 which presumably take the latter in for the reaction have been described as hammer-heads (Forster, ~.C. et al., Cell 49, 211-220 (1987);
Haseloff, J. e~ al., ~ature 334, 585-591 (1988)).

The cleavage ~i~es for th~e RNA enzymes are spe~ific and must display particular 6tructural requirements for processi~g to be able to occur.

It has now been found that ribozyme6 are able to attack plsnt RNA coding for ripening enzymes and thus can be used for i~fluencin~ the ripening proceRses in plants.

Regulation of the expression of the DNA coding ~or the ripening enzyme polygalacturonase by antisense RNA has been described by Smith C.J.S. et al. in Nature 334, 724 (1988). A fragment of the polygalacturonase cDNA is placed in the opposite orientation in an expre~sion vector. This vector plasmid i5 usled to transform, via E.
coli and Agrobacterium tumefacien~i, stalX ~egments of the tomato. Expression o~ antisen~e ~NA can then be detected in the leaves o~ the tomato plant. ~t is as~umed that the antisense RNA attaches it~elf to the actual polygalac-turonase RNA, leading to inactivation of the 12tter, with the further consequence tha~ there is partial inhibi~ion of polygalacturonase synthesi~.

Ribozymes which bind to sipening enzyme RN~ and are able to cleave the latter at particular cleavage ~ite~ in th~
equenCe have now been developed for ~pecifically influencing the ripeni~g process in plantsO It i~ po~-~ible with the aid of the ribozymes according to the invention ~or the synthesi~ of particular ripening enzymes not ~ust to be partially i~hibited but to be virtually completely inhibited, i.e. about 80~100%.

?.~2~
3 ~
Hence the invention relates to:

1. Genes or gene fragments encoding ribozymes~ and the corresponding ribozyme RNA sequences and a process for the preparation thereof.
2. Plants, plant cell~ and par~s or ~eeds of the plants which con~ain th~ DNA or ~NA ~equence speci~ied under 1.

3. The use of ribozymes for inhibiting the synthesis of ripening enzymes in plants.

The invention i5 described in detail hereinafter, espe-cîally in it~ pxeferr~d emhodiments. The invention i8 also defined in the claims.

~he ribozyme can be synthesized on ~he basis of ~he DNA
~equence of the ripening gene to be inhibited. In this connection, it is pos~ible in principle to ~tart from any DNA sequence coding for a plant ripening enzyme. Examples of such plant ripening enzymes are polygalacturonase, pectin estera6e and so-called ripening-related proteins.
It is preferable to choose a6 "starter" for the synthesis at least 10 consecutive nucleotidles, in particular 14 to ~0 nucleotidPs, advantageously ~Erom the middle of the cDNA sequence of the structural gene. It is particularly advantageou~ to start from the cDNA seguence for p~ly-qalacturonase (Griers~n, D. et al., NAR 14, 8595 (1986~), pectin estera~e (Ray, 3. et al., Eur. J. Biochem. 174, 119 (1988)) and for ripening-related protein (Ray, J. et al., NAR lS, 10~87 (1987)~ in each instance.

Chemical synthesi~ of ~ligonucleotides on the bAsi6 of the cDNA sequence is carried out in such a ~ay that the initial and final sequences of the oligonucleotides are each composed of 5, preferably 7 to 10, nucleotides which, taken t~gether, are complementary to a ~N~
sequence ~f the ripening enz~me to be inhibited and that _ the initial and ~inal sequences of the oligonucleotides are separated by an interpolated RNA sequence which is composed partly of specific nucleotides predetermined for the functionality of the ribozyme and partly of variable nucleotides. ~he appearance of the ribozyme hybridized with substrate RNA can be outlined as follows.

~-~NNNNNNNNNNNNGUC ~NNN~NNNNNNNNN-3 ~___sub~ rate ~NA
3-KKK~KKKKCA KKKKK~KK-5 A G

C G Gy VY
y ~ ~ ribozyme y ~ Loop ~L , ... ..

where N are nucleotides of the ~ubstrate RNA, A, C, G or T, R are complementary nucleotide~3 to N in the ribozyme, V are variable nucleotides in the ribozyme and VL are variable nucleotides in the loop of the ribozyme.
The number Of VL nucleotides in the loop can be 0-550. A
GU recognition sequence is preferably chosen as cleavage 5 ite in the substrate RNA.

The said oligonucl~otide~ are provided with an appro priate linker. Linkers of this type pOS~e85/ for example, cleavage sites for ~coRI, SalI, BamHI, HindIII, ~coRV, SmaI, ~hoI, RpnI, preferably ~baI and PstI.

The synthesized oligonucleotides are cloned with he aid of the vectors pUCl9, pUC18 or pBluescript (~tratagene, HPidelberg, Product Information~, and ~equenced. The verified oligonucleotide is cloned into an intexmedia~y vector with a plant promoter, Examples o~ vectors of ~his type ara the plasmid~ pPCV701 ~Yelten, J. et al. EMBO J.

~.J J.~ L

3, 2723-2730 (1984)), pNCN (Fro~m M. ~t al., PNAS B2, 5824-5826 t~985)) or pNO5 ~An G. et al., EMBO J. 4, 277-276 ~1985)). The vector pDH51 (Pietrzak, M. et al., Nucleic Acids ~es. 14, 5857, (19B6)) with a 35S promoter is preferably used.

After ~ubseguent transformation of E. coli, such as, for ex~mple, E. coli ~C 1061~ D~1, DR1, GM48 or ~L-l, posi-tive clones are identified by methods known per ~e (Maniatis et al., Lab. Manual), 6uch as plasmid mini-preparation and cleavage wi~h an appropriate restrictionenzyme.

These positive clone6 are then subcloned into a binary plant vector. Plant vectors wbich can be employed are pGV3850 (Zamb~ysk, P. et al., ENBO J. 2, 2143-2150 (1983)) or pOCU8 (Olszewski, N., Nucleic Acids Res. 16, 10765-10782, (1988)~. pOCA18 is preferably used.

The resulting binary plant vector,s which contain a plant promoter with the attached DNA fragment for ribozy~e production in the T-DNA are u~ed to trans~orm plants.
Techniques such as electroporation or microin~ection can be employed for this.

Preferably employed is cocultivation of protoplasts or transformation of small pieces of leaf ~ith Agrobacteria.
For this, the plant vector ~onstruct is transferred by transfor~ation with purified DNA orl mediated by a helper strain such as E. ~oli S~10 (S~mon R. et al., Biotechnology lr 784-791 (1983)), into Agrobacteri~m tumefaciens such as ~2~2 with a Ti plasmid ~ia triparen-tal ma~ing. Direct transformation and triparental mating were carried out ~s described in "Plant ~olecular Biology Manual" (~luwer Academic Publi~hers, Dordrecht (1988)).

It is possible in principle to transform all plants with binary plant vectors carrying ribozyme DNA. Dicotyledo-nous plants are preferred, especially productive plants ~2~

such as, for example, fruit-bearing plants. Tomato, strawberry, avocado and plants which bear tropical ~ruits, for example papaya, mango, but al~o peax, apple, nectarine, apricot or peach, may he mentioned as ex-amples. The described process is particularly preferablycarried out with ~he tomato. The transformed oell~ are selected with the aid of a selec~ion medium, cultured to a callus and regenerated to the plant on an appropriate medium (Shain et ai., Theor. ~ppl. Genet. 72, 770-770 (1986); Masson, J. et al., Plant Science S3, 167-176 (1987), han et al., Plant Nol. Biol. 11, 551-559 (1988);
~cGranaham et al., Bio/Technology 6, 800-804 ~1988);
Novrate et al., Bio/Technol. 7, 1~4-159 ~1989~).

The resulting plant is altered by the transformation in such a way thst the ribozymes are expressed in the cells, which in turn has the effect that the ribozyme RNA not only binds to the RNA complementary to the appropriate ripening genes and brings about more ox less extensive inhîbition of synthesis o~ the ri~penin~ enzyme, but that the RNA complementary to the appropriate ripening ~enes is ~pecifically cut at GUC seq~lences, which le~ds to almost complete inhibition of synthesis of the relevant ripening enzyme.

~ he formation of the ribozyme-specific ~econdary struc-tural feature6 of the ribozyme RNA synthesized in the transgenic plant in vivo was entirely unexpected, BO that the observed i~hibition of ~ynthesis of the ripening enzymes was ~ompletely surpri~ing.

The example~ which follow fierve to illustrate ~he invPn-tion f~lrther.

~ample~

Unless indicated otherwise~ percentage data xelate to wei~ht.
1. Cloniny of the oligonucleotides The ~ynthesis of the oligonucleotides for ribozyme expression was based on the cDNA seguence a) 5' TG~TGGAGTCCATG~T~A 3~ Section of the polygalact.
cDN~ eequence according to Grierson, D. et al., Nucleic Acids Re~. 14, b) S' TAGCAAGTCCTGACCTAA 3' Section of the cDNA
sequence of pect~n estera~e according to Ray, J., Eur.
J. Biochem. 174, 119-124 (1988) c) 5' TGCTTTGTCCGATACAGT 3' Section of the cD~A
seg~ence of a xipening-related ~rotein according to Ray, J., Nucleic Acids Re~ , 105~7 (1987) The phosphoramidite method (~ngels J. et al., Advances in Biochemical Engineering Biotechnology Volume 37 ed~: A.
~iech~er, Springer Vexlag, Berlin/Heid~lberg, 1988) wa~
u~ed to ~ynthesize the following oli~onucleotides in a synth~sizer: -fox a) 5' CTAGATGATACATGCTGATGAGTCCGTGAGGACGAAACTCCATCTGCA 3 3'TACTATGTACGRCTACTCAGGCACTCCTGCTTTGAGGTAG 5~

f or b) 5' -CTAGATTAGGTCAGCTGATGAGTCCGTGAGGAGGAAACTTGCTACTGCA-3' 3~-TAATCCAGTCGACTACTCAGGCACTCCTGCTTTGAACGATG-5~

2 ~

for c~ 5' -CTAG~CTGTATCGCTGATGAGTCCGTGAGGACGAAACAAAGCACTGCA-3' 3'-TGACATAGCGACTACTCAGGCACTCCTGCTTTGTTTCGTG-5' Th~ vector pDH51 (Pietrzak, M. et al., Nucleic Acids Res.

14, S857 19) was cut with the re~triction endonucleases XbaI and P~tl, incubated with calf lntestinal phospha~a~e (CIP), phenol-treated and precipitated ~Maniati~, ~ab.
Manual). The vector treated in thi way wa6 ligated with a three-~old exce~ of phosphorylated oligonucleotid~s and transformed into E. coli ~C1061. Positive clones were identified by plasmid minipreparations and 3ubsequent digestion with ~baI and PstI.

In addition, the ampicillin resistant transformed E. coli cells (100 ~g of ampicillin per ml of LB m~dium) were transferred to nitrocellulose membrane~ (Gene Screen Plus~, NEN, Boston) and incubated on ~B medium containing ampicillin at 37C for a further 14 hours. The colonies were then disrupted in 0.5 M :NaOH and fixed. After drying, it was possible to hybr.Ldize the filters wi~h radiolabeled oligonucleotides. Positive clones produced blackening on the film.

2. Subcloning of a 35S promoter gene fragment in pOCA 18 A 0.75 ~b EcoRI fr~gment was isolated from ~a~h of the clones obtain~d a~ in 1. ~his fragment was inserted into a pOCA 18 vector which had been cut with ~coRI, and was transformed into E. coli MC1061. Positive clones were identified by plasmid minipreparatio~s and, after subse-guen~ hydr~ly~is with ~coRI, by the appearance of the 0.75 kb band.

3. Transformation of Agrobacterium tumefacien~

In order to bP able to transform plants, th~ construct obtained as in 2. mu8t be tran~ferred into an Agrobac-terium. This takes place ~ither by triparental mating or directly. In the case of triparental mating, 100 ~1 2 ~
g samples of bacteria from overnight cultures of E. coli SM10, the E. coli ~C1061 carrying the construct, and ~grobacterium ~umefacien~ were 6pun down and taken up together in 30 ~1 of LB medium. After 30 minutes ~t room 5 temperature, thi~ bacteria su~pension was placed on a filter on an LB plate without antibiotics. ~he filt~r was incubated at 37C for 12 h and then washad in 2.5 ml of 10 mM MgCl2. Aliguots were selected on LB plates contain-ing rifampicin, ~etracycline and kanzmycin. Po~itive colonies were identified by hybridizstion with 32P-labeled DNA of the gen~ to be expr~ssed.

In the case of direct transformation of Agrobacteria, the cells were cultured at 28C overnight in YEB medium (1~
yeast extract, 1~ peptone, 0.5~ NaCl) containing 25 ~g/ml kanamycin and 100 ~g/ml rifampicin. After 16 hours, the bacteria suspen~ion was diluted to an OD~50 of 0.1 and incubatPd further at 28C until t!he OD550 was 0.5. 1 ml of this culture was ~pun down and wal~hed with 1 ml of 150 mM
NaCl. After wa~hing, the precipitate wa~ resuspended in 600 ~1 of ice-cold 10 mM CaCl2 solution.

The pOCA lB vecto~ with ~he cloned 0.75 kb fragment was isolated ~rom the E. coli clones obtained as in 2. after disruption of the cell~ with 0.2 N NaOH/1% SDS, wa~
purified by CsCl density gradient centrifugation. 1 ~g of ~5 the plasmid DNA was added to the competent Agrobacteria, and the Eppendorf tubes were placed on ice for 1 hour.
After 1 hour, the pla6mid solution was in~ubated at 37C
for 5 minutes, and 2 ml of YEB medium were added. The cells were then incubated at 28C i~ a ~hakin~ incubator overni~ht. Thereafter 100 ~1 ~ample~ were placed on YEB
plates containing 1~0 ~/ml rifampicin, 25 ~g/ml kanamy-cin and 2.5 ~g/ml tetracycline. Colonies were found on the plates after 2 day6 at 28C. Positive clones were detected by hybridization wikh the appropriate 32P-labeled oligonucleotides a~, b~ or c~.

For this, the trans~o~med Agrobac~eria were ~treaked on Gene Screen Plus membranes and incubated on YEB plates containing 100 ~g/ml rifampicin, 25 ~g/ml kanamycin and 2.5 ~g/ml tetracycline at 28C or 14 hour~. The mem-branes wer~ then placad on 0.5 ~ NaOH for 2 minutes and subseguently on 0.5 M Tris, pH 7.5, for 2 minutes. After drying, prehybridization wa~ carried ~ut in 10~ dextran sulfate/l M NaCl/l~ SDS at 55C for 2 hour6, and then the radiolabeled oligonucleotidee a), b) or c~ were added.
The filter~ were incubated together with the radiolabeled oligos at 55C overnight. After washing at 55Uc for 30 minutes each with lx SSC (0.15 M NaCl, 0.015 N sodium citra~e, pH 7.0) and 2x with 0.2 x SSC, the positive clones were identified by blackening of a film placed on top.
4. Transformation of toma~oes a) Protoplast transformation:
Tomato protoplasts (Plant ~ell Reports 6, 172-175 (1987)) are washed once with W5 solution (154 mM NaCl, 125 mM CaCl2 . 2 2 ~2~ 5 mM RCl, 5 mM ~lucose) and once with MaMg solution (0.45 1~ mannitol, 25 mM MgCl2, 0.1~ 2-(N-morpholino)ethanesulfonic acid (MES, pH 5.8) from Sigma Chemie, Deisenhof~n, FR Germany). After careful centrifugation at 600 rpm for 3 minutes, the supernatant, apart from 0.5 ml, is aspirated offO To this are added by pipette 50 ~g of calf thymus DNA, 10 ~g of the described pla~mid and 10 drops of 45%
polyethylene glycol (PEG 8000). After 10 minu~es, the protoplasts are washed twice w~th W5 solution and incubated in LC~ medium (Plant Cell Reports 6, 172-175 (1987)).

b) Transformation of ~mall pieces of leave~ with Agrobacterias Tomato l~aves are cut up small and placed on MS medium (Murashige, T. et al., Physiol. Plant 15, 473 497 (1962)~ containing 2~ sucrose and 1 ppm plant growth hormone zeatin (Serva Feinbiochemica GmbH & Co., 7 ~ ~

Heidelberg, FR ~ermany) and incubated at 25C over a period of 16 hours li~ht/day. Infection with Agrobac-teria is carried out one day later. This entails the small pieces of leaves ~eing briefly Lmmersed in a dilute bacteria suspension (OD 0.15) of the trans-formed Agrobacterium strain, replaced on the ~ame plate and ~urther incubated under the same conditions.
On the third day, all ~he small pieces of leaves are washed with 250 mg~l carbenicillin solution and placed on a 2MS medium containing 1 ppm zeatin, 200 ~g/l cefotaxime (Hoechst AG, Frankfurt), 200 mg/l carbeni-cillin and 100 mg/l kanamycin. Regenerant~ were transferred after approximately 20 more days to 2~S
medium containing 1 ppm zeatin, 200 mg/l cefotaxime, 200 mg/l carbenicillin and 100 mg/l kanamycin.

Detection of the ribozyme ~NA oE a transgenic tomato plant which is directed against the ripening-related protein RNA.

The total cellular RNA was isolated from a small piece of leaf from a transgenic tomato plant which had been transformed with the ribozyme-encoding gene directed against the ripening-relate~ protein RNA. For thi~, the leaf materi 1 was ground with a mortar and pestle under liquid nitrogen. ~he powdered leaf material was ~ixed with twice the volume o~ an extraction buffer (0.2 M
~odium acetate, 1~ SDS, 10 m~ EDTA), twice the volume of phenol (equilibrated with extraction buf er3 and half the volume of chloroform~isoamyl alcohol 24:1 (v~v)- After very thorough mixing, the phases were ~eparated by centrifugation and the phenolic extraction of the upper aqueous phase W86 repeated. This aqueous phase was, af~er mixing and separation by centrifugation, agai~ tran~-ferred into a fresh Eppendorf tube and extracted with chloroform~ isoamyl alcohol 24:1 (v/v). ~hen 1/3 volume of 8 ~ LiCl was added to the aqueous phase, and the mixture was maintained at 4C overnight. A ~recipitate formed after centrifugation This was taken up in w~ter 2 ~

and, after addition of 0.3 M ~odium acetate (p~ 5.5) (final concentration), washed with 2 1/2 vol~mes of ethanol. After washing with 70~ ethanol and drying, the precipitate was taken up in 50 ~1 of water.

To detect the specific expre~6ion of the ribozyme-encod-ing gene, samples of about 4 ~g of total R~A from a non-transformed wild-type tomato plant and from a transgenic tomato plant were applied to a 1% agarose gel with 6%
formaldehyde. For the application, the ~NA was dried, taken up in 50% formamide/6~ formaldehyde and heated at 60C for 15 minutes. The agarose gel was briefly washed with H20 after the run and transferIed with 10 x SSC to a Gene Screen Plus membrane. After 24 hours, the membrane was washed with 2 x SSC, incubated at 80C for 2 h ~nd dried.

Hybridization was carried out after 2 hour~' prehybridi-zation with 1~ SDS, 1 M NaCl and 10~ dextran sulfate at 55C with radiolabeled oligonucleotide c) of the ripening-related protein DNA.

Detection of the ribozyme-encodinla gene directed against ~he ripening-related protein RN~.

2 small pieces of leaf from he tran~genic tomato plant or from a non-txans~ormed wild-type tomato were com-minuted under li~uid nitrogen with a mortsr and pe~tle.
~he powder was placed in Eppendor~ tube~ and m~xed with 500 ~1 of 2 x CTAB buffer (2 x C~AB- 2% cetyltrLmethyl-ammonium bromide, 100 mM Tris pH 8.0, 20 mM ED~, 1.4 NaCl, 1% polyvinylpyrrolidone ~W = 40,000) which h~d previously been haated ~t 65C. Then 500 ~1 o chloroform/isoamyl alcohol 24:1 (~/v) were added, and the aqueous phase was ext~acted. The t~o phases were then ~eparated by centrifuga~ion. Ths aqueous phase was pipetted into a new Eppendorf tube, and 100 ~1 of 5% CTAB
which had been heated at 65C wer~ added. Another cxtrac-tion with chloroform~ieoamyl alcohol was c~rried ou~

7 ~J ~

before 500 ~1 o CTAB precipitating buffer (1% C~AB, 50 mM Tri~ pH 8.0, 10 mM EDTA) were added to the aqueous phase. After cen~rifugation, ~he precipitate was dis-solved in high-~alt TE (10 mM Tris pH 8.0, 1 m~ EDTA, 1 NaCl~ and precipitated with 2 1/2 volumes of ethanol.
After centrifugation, wa~hing and drying, th~ precipitate was ~aken up in water and treated with 25 ~g/ml RNase A
(final concentration). ~he RNase was subsequently removed by phenol treatment. ~fter renewed drying, the DNA was taXen up in S0 ~1 of water.

Then 4 ~g of the DNA were hydrolyzed with the restriction endonuclease Eco RI at 37C for 1 hour. The hydrolyzate was fractionated on a 1% agarose gel. The gel was ~haXen wi~h 0.4 N NaOH/0.6 M NaCl ~or 30 min and then with 0.5 M Tris Cl pH 7.5/1.5 ~ NaCl for 30 min. The si~e standard used was a PstI hydrolyzate of ~-phage DNA.

The DNA was then trans~erred to a Gene Screen Plus membrane with 10 x SSC via a cap.Lllary blot. The filter was then dried and prehybridized with 1% SDS/l M NaCl/10~
dextran sulfate. Por the hybridization, the prehybridiza-tion mix was mixed with a radiolabeled ~ample of oligonucle~tide c) which had prelriously been boiled for 10 minutes.

~he ribozyme-encoding ~ene was detected by the appearance of blackenin~ at about 0.~ kb on the X-r~y film placed on top.

Detection of the in vitro activity of the ribozymes The oligonucleotide which encoded a ribo~yme against the ripening-related protain RNA was cloned into the Blue-script ~ector which had been opened after hydrolysi~ withthe restric*ion Pndonucleases XbaI and ~tI. In parallel with thisl a DNA fragment of the ripening-related pxotein (nucleotide numbers 792-815 of DNA ~equence publiRhed by Ray, ~. et al., ~ucleic Acids Res. 1~, 10587 ~1987)) was ~7 cloned into the SacI/RpnI cleavage ~ite in the same vector. Both vectors were used in an in vitro R~A poly-merase reaction a5 DNA templates for the RNA sy~thesis.

For this, in parallel, the vector carrying the ribozyme gene and ~he vector c~rrying the DN~ fragment of the ripening related protein gene were ~ut with the r2s~ric-tion endonuclea~e SacI. 1 ~g ~amples of the opened vectors were then incubated with 10 ~mol of each of the nucle~tides ATP, GTP, CTP, U~P and (~-32P)UTP (5 . . . ) i~
50 mM ~EPES (p~ 7.5) and 10 U of T7 RNA polymerase at 37DC for 30 minutes. The ~NA was, after DNase treatment, precipita~ed in ethanol.

The synthesized RNA of the vector carrying the ribozyme gene and the RNA of the vector carryin~ the ripening-related protein gene ~ragment were incubated together in50 mM Tris.Cl (pH 7.8) and 10 mM MgCl2 at 25C for ~ hours. The reaction products were then separated on a 5% denaturing polyacrylamide gel (8 M urea) and iden-tified by autoradiography on an X-ray film. The auto-radiogram shows that, in the presence of ribozyme RNA,the RNA transcript of the ripening-related protein gene ~ragment was cleaved.

Detection of the delayed ripening of transgenic tomatoes Comparison of a non-tran~formed wild-type toma~o plant with a transgenic tomato plant ~hich ~arrie~ the ribozyme-encoding ~ene dire~ted against the ripening-related protein RNA rsvealed that the to~atoes from the transgenic plant ripened several days later. The rib~zyme activity and the delay in ripening asfiociated therewith has thu~ also been detected in the tomato fruit, ~hich r presents the actual site of a~tion.

Claims (15)

1. A ribozyme-encoding gene or gene fragment having the D
sequence a) b) c)
2. RNA with ribozyme activity of the sequence in which K are nucleotides A, C, G or U complementary to the plant ripening enzyme DNA, V are variable nucleotides A, C, G or U and VL are variable nucleotides A, C, G or U in the loop, where the number of VL nucleotides in the loop is a number from 0 to 550.
3. RNA with ribozyme activity with the sequence a) b) c)
4. A process for preparing a ribozyme encoding gene or gene fragment having the DNA sequence a) b) c) by synthesis of oligonucleotides, which comprises syn-thesizing oligonucleotides whose initial and final sequences are each composed of 5, preferably 7 to 10, nucleotides which, taken together, are complementary to a DNA sequence of the ripening enzyme to be inhibited and are separated by an interpolated DNA sequence which is composed partly of specific nucleotides predetermined for the functionality of the ribozyme and partly of variable nucleotides.
5. A process for preparing RNA with ribozyme activity of the sequence, ribozyme which comprises synthesizing an oligonucleotide of the sequence in which K are nucleotides A, C, G or T complementary to the plant ripening enzyme RNA, V are variable nucleotides A, C, G or T, VL are variable nucleotides A, C, G or T, where the number of VL nucleotides is a number from 0 to 550, and K', V' VL' is in each case nucleotides A, C, G
or T complementary to K, V, VL, which is cloned into an intermediary vector with plant promoter, when cloned together with the plant promoter into a binary plant vector, and a plant is transformed with the plasmid DNA obtained in this way.
6. The process as claimed in claim 5, wherein the synthe-sized RNA with ribozyme activity is an RNA of the sequence a) b) or c)
7. Plant cells, plants, the seeds and parts thereof, con-taining one or more of the DNA sequences as claimed in claim 1.
8. Plant cells, plants, the seeds and parts thereof, con-taining one or more of the RNA sequences as claimed in either of claims 2 or 3.
9. A tomato, parts thereof, plant cells or seeds thereof, containing one or more of the DNA sequences as claimed in claim 1.
10. A tomato, parts thereof, plant cells or seeds thereof, containing one or more of the RNA sequences as claimed in either of claims 2 or 3.
11. The use of ribozymes for inhibiting the synthesis of ripening enzymes in plants.
12. The use as claimed in claim 11, wherein the plants are fruit-bearing plants.
13. The use as claimed in claim 12, wherein the fruit-bearing plants are tomatoes.
14. The use as claimed in one or more of claims 11 to 13, wherein the RNA sequence as claimed in either of claims 2 or 3 is employed as ribozyme.
15. A ribozyme-encoding gene or gene fragment as claimed in claim 1 and substantially as described herein.
CA002024720A 1989-09-07 1990-09-06 Rna with endoribonuclease activity for mrna of ripening genes, the preparation thereof and the use thereof in plants Abandoned CA2024720A1 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
DEP3929741.1 1989-09-07
DE3929741A DE3929741A1 (en) 1989-09-07 1989-09-07 RNA WITH ENDORIBONUCLEASE ACTIVITY AGAINST MRNA OF RIPENING GENES, THEIR PRODUCTION AND THEIR USE IN PLANTS

Publications (1)

Publication Number Publication Date
CA2024720A1 true CA2024720A1 (en) 1991-03-08

Family

ID=6388827

Family Applications (1)

Application Number Title Priority Date Filing Date
CA002024720A Abandoned CA2024720A1 (en) 1989-09-07 1990-09-06 Rna with endoribonuclease activity for mrna of ripening genes, the preparation thereof and the use thereof in plants

Country Status (9)

Country Link
EP (1) EP0416572B1 (en)
JP (1) JPH03108484A (en)
AT (1) ATE122719T1 (en)
AU (1) AU634575B2 (en)
CA (1) CA2024720A1 (en)
DE (2) DE3929741A1 (en)
DK (1) DK0416572T3 (en)
ES (1) ES2074105T3 (en)
NZ (1) NZ235181A (en)

Families Citing this family (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE4091533T (en) * 1989-08-31 1992-01-30
GB8928179D0 (en) * 1989-12-13 1990-02-14 Ici Plc Dna,constructs,cells and plants derived therefrom
CA2084790C (en) * 1990-06-19 2002-04-09 Philip Anthony Jennings Endonucleases
US6008343A (en) * 1990-06-19 1999-12-28 Gene Shears Pty. Ltd. Nucleotide based endonucleases
GB9210273D0 (en) * 1992-05-13 1992-07-01 Ici Plc Dna
US6350934B1 (en) 1994-09-02 2002-02-26 Ribozyme Pharmaceuticals, Inc. Nucleic acid encoding delta-9 desaturase
EP0837933A4 (en) 1995-06-07 2003-05-21 Commw Scient Ind Res Org Optimized minizymes and miniribozymes and uses thereof
AU6761796A (en) * 1995-07-13 1997-04-01 Dowelanco Compositions and method for modulation of gene expression in plants

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB8626879D0 (en) * 1986-11-11 1986-12-10 Ici Plc Dna

Also Published As

Publication number Publication date
DE3929741A1 (en) 1991-03-28
JPH03108484A (en) 1991-05-08
DE59009087D1 (en) 1995-06-22
EP0416572A1 (en) 1991-03-13
ES2074105T3 (en) 1995-09-01
NZ235181A (en) 1992-07-28
DK0416572T3 (en) 1995-10-09
ATE122719T1 (en) 1995-06-15
EP0416572B1 (en) 1995-05-17
AU634575B2 (en) 1993-02-25
AU6218690A (en) 1991-03-14

Similar Documents

Publication Publication Date Title
AU694093B2 (en) DNA virus ribozymes
US10287598B2 (en) Methods for preparing pecific polypeptide-binding antibodies
US5707840A (en) Multifunctional RNA having self-processing activity, the preparation thereof and the use thereof
JP2002514915A (en) How to select for transgenic plants
CA2024720A1 (en) Rna with endoribonuclease activity for mrna of ripening genes, the preparation thereof and the use thereof in plants
EP1827081A2 (en) Stress tolerance in plants through selective inhibition of trehalose-6-phosphate phosphatase
CA2156728C (en) Plant virus resistance conferring polyribozyme and resistant plants producing same
IE903825A1 (en) RNA having endonuclease and antisense activity, the preparation thereof and the use thereof
EP1055727B1 (en) Cloning of an N-methyltransferase involved in caffeine biosynthesis
AU763298B2 (en) Ribozymes capable of conferring resistance to potyvirus infection, and plants expressing said ribozymes
Berthomé et al. Expression of a yeast RNase III gene in transgenic tobacco silences host nitrite reductase genes
JP3522042B2 (en) Phosphate transporter gene promoter
JP2001186879A (en) Method for increasing stress resistance of plant by suppressing proline-splitting system
CA2167701A1 (en) Dna virus ribozymes
Shiran Arabidopsis Cold Stress Tolerance Improvement via AthHOS1-targeting HOS1-amiRNA approach
BRPI0820741B1 (en) METHOD FOR REDUCING Cd LEVELS IN A TOBACCO PLANT
JP2004105075A (en) Coffee-derived caffeine synthase and gene encoding the enzyme
BR122018008802B1 (en) CONSUMABLE TOBACCO PRODUCT COMPRISING LEAVES OF A MODIFIED TOBACCO PLANT WITH REDUCED CADMIUM LEVELS
MXPA00005493A (en) Ribozymes capable of conferring resistance to potyvirus infection, and plants expressing said ribozymes
JP2004105076A (en) Ilix paraguayensis-derived new n-methyltransferase and gene encoding the enzyme
JP2004173613A (en) Paraxanthine n-methyltransferase and enzyme encoding the same enzyme

Legal Events

Date Code Title Description
EEER Examination request
FZDE Discontinued